Selected publications at LSV

Abstract:
In systems biology, models of cellular regulatory processes such as gene regulatory networks or signalling pathways are crucial to understanding the behaviour of living cells. Available biological data are however often insufficient for full model specification. In this paper, we focus on partially specified models where the missing information is abstracted in the form of parameters. We introduce a novel approach to analysis of parametric logical regulatory networks addressing both sources of combinatoric explosion native to the model. First, we introduce a new compact representation of admissible parameters using Boolean lattices. Then, we define the unfolding of parametric regulatory networks. The resulting structure provides a partial- order reduction of concurrent transitions, and factorises the common transitions among the concrete models. A comparison is performed against state-of-the-art approaches to parametric model analysis.

@inproceedings{KSHP-sasb16,
   address = {Edinburgh, UK},
   author = {Kol{\v c}{\'a}k, Juraj and {\v S}afr{\'a}nek, David and Haar, Stefan and Paulev{\'e}, Lo{\"i}c},
   booktitle = {{P}roceedings of {T}he {S}eventh {I}nternational {W}orkshop on {S}tatic {A}nalysis and {S}ystems {B}iology (SASB 2016)},
   month = sep,
   note = {To appear},
   publisher = {Elsevier Science Publishers},
   series = {Electronic Notes in Theoretical Computer Science},
   title = {{Unfolding of Parametric Logical Regulatory Networks}},
   url = {https://hal.archives-ouvertes.fr/hal-01354109},
   year = {2016},
}

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